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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GBF1, golgi brefeldin A resistant guanine nucleotide exchange factor 1
Sequence ID:NM_001199378
NM_001199379
NM_004193
Entrez Gene ID:8729
Ensembl ID:ENSG00000107862

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 104005308 - 104142649


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40070852Full LengthBC117681golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1
40070853Full LengthBC117682golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1
4131763IncompleteBC007941golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1
4561065IncompleteBC014171golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1
5535398IncompleteBC032543golgi-specific brefeldin A resistant guanine nucleotide exchange factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004184  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199378 NP_001186307    
NM_001199379 NP_001186308    
NM_004193 NP_004184 Q92538 Sec7

Related Sequences

 
mRNAGenPeptSwissProt
AF068755 AAD15903 Q92538
BC007941 AAH07941 Q92538
BC014171 AAH14171 Q92538
BC032543 AAH32543 Q05BW6
BC094763 AAH94763 Q504U7
BC117681 AAI17682 Q149P1
BC117682 AAI17683 Q149P0
D87435 BAA13379 Q92538

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GBF1 NP_001186307 M.musculus Gbf1 107338 Gene Info NP_849261 94
R.norvegicus Gbf1 309451   XP_219953 94
A.gambiae AgaP_AGAP001527 1281652   XP_321598 47
D.melanogaster garz 36337   NP_610761 47
C.elegans gbf-1 176609   NP_499522 44
A.thaliana GN 837958   NP_172851 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta