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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CYC1, cytochrome c-1
Sequence ID:NM_001916
Entrez Gene ID:1537
Ensembl ID:ENSG00000179091

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 145149979 - 145152428

NM_001916 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1172145149959145150130
173369145150735145150931
370496145151026145151152
497654145151239145151396
655815145151486145151646
816916145151936145152036
9171209145152134145152426

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821836Full LengthBC001006cytochrome c-1
4157475Full LengthBC020566cytochrome c-1
4840922Full LengthBC015616cytochrome c-1
4470223IncompleteBC024650cytochrome c-1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001907  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001916 NP_001907 P08574 Cytochrom_C1

Related Sequences

 
mRNAGenPeptSwissProt
M16597 AAA35730 P08574
BC001006 AAH01006 P08574
BC015616 AAH15616 P08574
BC020566 AAH20566 P08574
BC024650 AAH24650 Q8TBT6
BT019798 AAV38601 P08574
DQ891486 ABM82412  
DQ894671 ABM85597  
X06994 CAA30052 P08574
CR541674 CAG46475 P08574

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CYC1 NP_001907 M.musculus Cyc1 66445 Gene Info NP_079843 91
A.gambiae AgaP_AGAP006936 1270149   XP_308821 62
D.melanogaster CG4769 38612   NP_647958 58
A.thaliana AT5G40810 834081   NP_198897 56
A.thaliana AT3G27240 822343   NP_189360 56
S.cerevisiae CYT1 854231   NP_014708 55
S.pombe cyt1 2540456   NP_595846 53
N.crassa NCU09816 3879905   XP_963756 52
C.elegans cyc-1 172582   NP_492207 51
P.falciparum PF14_0597 812179   XP_001348771 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)