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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COTL1, coactosin-like 1 (Dictyostelium)
Sequence ID:NM_021149
Entrez Gene ID:23406
Ensembl ID:ENSG00000103187

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 84599206 - 84651173

NM_021149 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2813838459920584600560
138415418462371084623867
154216248465110684651188
162518508465144384651668

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3537437Full LengthBC010884coactosin-like 1 (Dictyostelium)
3604770Full LengthBC010039coactosin-like 1 (Dictyostelium)
4068379Full LengthBC016702coactosin-like 1 (Dictyostelium)
5113263Full LengthBC053682coactosin-like 1 (Dictyostelium)
5288618Full LengthBC042970coactosin-like 1 (Dictyostelium)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066972  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021149 NP_066972 Q14019 Cofilin_ADF

Related Sequences

 
mRNAGenPeptSwissProt
L54057 AAA88022 Q14019
BC010039 AAH10039 Q14019
BC010884 AAH10884 Q14019
BC016702 AAH16702 Q14019
BC042970 AAH42970 Q14019
BC053682 AAH53682 Q14019
BT006968 AAP35614 Q14019
EU832743 ACE87075  
JF432552 ADZ15769  
AK315675 BAG38040 Q14019

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COTL1 NP_066972 M.musculus Cotl1 72042 Gene Info NP_082347 95
R.norvegicus Cotl1 361422   NP_001101922 95
A.gambiae AgaP_AGAP000889 1277406   XP_316866 46
D.melanogaster CG6891 32865   NP_573323 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)