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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SETD5, SET domain containing 5
Sequence ID:NM_001080517
Entrez Gene ID:55209
Ensembl ID:ENSG00000168137

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 9475676 - 9518143

 Exon Info From UCSC:
NM_001080517

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3851178Full LengthBC020956SET domain containing 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080517 NP_001073986 Q9C0A6  

Related Sequences

 
mRNAGenPeptSwissProt
BC020956 AAH20956 Q9C0A6
AK001569 BAA91762 Q9C0A6
AK024384 BAB14903 Q9C0A6
AK025478 BAB15144 Q9C0A6
AB051544 BAB21848 Q9C0A6
AK289529 BAF82218 A8K0G4
AK091393 BAG52348 B3KRD6
AK127298 BAG54476 B3KXG4
AL442073 CAC09439 Q9C0A6
CR627408 CAH10497 Q9C0A6
BX648380 CAH10552 Q6AW96

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SETD5 NP_001073986 M.musculus Setd5 72895 Gene Info NP_082661 94
R.norvegicus Setd5 297514   NP_001100084 94