Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC5A7, solute carrier family 5 (choline transporter), member 7
Sequence ID:NM_021815
Entrez Gene ID:60482
Ensembl ID:ENSG00000115665

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 108602994 - 108630443

NM_021815 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1225108602994108603218
226454108604560108604788
455568108608561108608674
569724108609427108609582
725873108614293108614441
8741017108618352108618495
10181171108622504108622657
11721389108624920108625137
13905141108626687108630438

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40034612Full LengthBC111524solute carrier family 5 (choline transporter), member 7
40034618Full LengthBC111525solute carrier family 5 (choline transporter), member 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068587  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021815 NP_068587 Q9GZV3 SSF

Related Sequences

 
mRNAGenPeptSwissProt
AF276871 AAG25940 Q9GZV3
BC111524 AAI11525 Q2T9H3
BC111525 AAI11526 Q9GZV3
AB043997 BAB18161 Q9GZV3
AK315280 BAG37689 B2RCU2
AK300801 BAG62459 B4DUU7
AJ401466 CAC03717 Q9GZV3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC5A7 NP_068587 M.musculus Slc5a7 63993 Gene Info NP_071308 93
R.norvegicus Slc5a7 85426   NP_445973 93
D.melanogaster CG7708 42245   NP_650743 60
A.gambiae AgaP_AGAP002366 1273596   XP_312589 59
C.elegans cho-1 178274   NP_502539 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)