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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C1orf43, chromosome 1 open reading frame 43
Sequence ID:NM_001098616
NM_015449
NM_138740
Entrez Gene ID:25912
Ensembl ID:ENSG00000143612

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 154179182 - 154193093

 Exon Info From UCSC:
NM_001098616
NM_015449
NM_138740

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822327Full LengthBC006514chromosome 1 open reading frame 43
2901006Full LengthBC000152chromosome 1 open reading frame 43
3051048Full LengthBC001377chromosome 1 open reading frame 43
3502049Full LengthBC008306chromosome 1 open reading frame 43
3544590Full LengthBC014391chromosome 1 open reading frame 43
6164281Full LengthBC088353chromosome 1 open reading frame 43

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620077  NP_056264  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001098616 NP_001092086 Q9BWL3  
NM_015449 NP_056264   NICE-3
NM_138740 NP_620077   NICE-3

Related Sequences

 
mRNAGenPeptSwissProt
AF077036 AAD27769 Q9BWL3
BC000152 AAH00152 Q9BWL3
BC001377 AAH01377 Q9BWL3
BC006514 AAH06514 Q9BWL3
BC008306 AAH08306 Q9BWL3
BC014391 AAH14391 Q9BWL3
BC088353 AAH88353 Q9BWL3
AF529365 AAQ09599 Q9BWL3
AF109185 AAQ13494 Q9BWL3
DQ908899 ABI60896 Q09GN0
HQ447133 ADQ31620  
AK290583 BAF83272 Q9BWL3
AL117463 CAB55939 Q9BWL3
AJ243663 CAB65094 Q9BWL3
AJ243664 CAB65095 Q9BWL3
AJ243665 CAB65096 Q9BWL3
CR457131 CAG33412 Q9BWL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C1orf43 NP_001092086 M.musculus 4933434E20Rik 99650 Gene Info NP_080038 96
R.norvegicus LOC361985 361985   NP_001014196 95
A.gambiae AgaP_AGAP004471 1274619   XP_313770 43
D.melanogaster CG6665 36903   NP_725632 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)