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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ARF1, ADP-ribosylation factor 1
Sequence ID:NM_001024226
NM_001024227
NM_001024228
NM_001658
Entrez Gene ID:375
Ensembl ID:ENSG00000143761

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 228270428 - 228286826

 Exon Info From UCSC:
NM_001024226
NM_001024227
NM_001024228
NM_001658

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2963635Full LengthBC009247ADP-ribosylation factor 1
3356859Full LengthBC010429ADP-ribosylation factor 1
3463523Full LengthBC011358ADP-ribosylation factor 1
4024984IncompleteBC010415ADP-ribosylation factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001649  NP_001019397  NP_001019399  NP_001019398  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001024226 NP_001019397 P84077 Arf
NM_001024227 NP_001019398 P84077 Arf
NM_001024228 NP_001019399 P84077 Arf
NM_001658 NP_001649 P84077 Arf

Related Sequences

 
mRNAGenPeptSwissProt
M84326 AAA35512 P84077
M36340 AAA35552 P84077
AF055002 AAC09356 P84077
AF052179 AAC28623 P84077
BC009247 AAH09247 P84077
BC010429 AAH10429 P84077
BC011358 AAH11358 P84077
AF493881 AAM12595 P84077
BT007393 AAP36057 P84077
AK293553 BAG57030 B4DEB9
AK296020 BAG58790 B4DJC8
AK297792 BAG60132 B4DN70
AM393261 CAL38139  
AM393462 CAL38339  
AM393595 CAL38472  
AM393712 CAL38588  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARF1 NP_001019397 D.melanogaster Arf79F 40506   NP_730760 97
A.gambiae AgaP_AGAP012014 1280655   XP_320516 97
M.musculus Arf2 11841 Gene Info NP_031503 96
R.norvegicus Arf2 79119   NP_077064 96
C.elegans arf-1.2 175801   NP_498235 94
A.thaliana ARFA1B 831319   NP_196971 90
S.pombe arf1 2540899   NP_596118 88
N.crassa NCU08340 3881408   XP_965243 88
S.cerevisiae ARF1 851335   NP_010089 78
S.cerevisiae ARF2 851418   NP_010144 77
P.falciparum PF10_0203 810360   XP_001347487 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta