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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KRT39, keratin 39
Sequence ID:NM_213656
RefSeqGene ID:NG_012415
Entrez Gene ID:390792
Ensembl ID:ENSG00000196859

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 39114668 - 39123144

NM_213656 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14433911466839115110
4446643911653239116752
6657903911841339118538
7919523911865339118814
95311093911987839120034
111011923912069739120779
119316963912264039123143

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862708Full LengthBC157887keratin 39
100064009Full LengthBC160073keratin 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_998821  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_213656 NP_998821 Q6A163 Filament

Related Sequences

 
mRNAGenPeptSwissProt
BC157887 AAI57888 Q6A163
BC160073 AAI60073 Q6A163
AJ786657 CAH10352 Q6A163
BK004054 DAA04487 Q6A163

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KRT39 NP_998821 R.norvegicus Krt39 303523   NP_001004130 75
M.musculus Krt39 237934 Gene Info NP_998895 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)