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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN4, opsin 4
Sequence ID:NM_001030015
NM_033282
Entrez Gene ID:94233
Ensembl ID:ENSG00000122375

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 88420232 - 88423870

 Exon Info From UCSC:
NM_001030015
NM_033282

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322610Full LengthBC113558opsin 4
9052202Full LengthBC143688opsin 4
5182239IncompleteBC029291opsin 4 (melanopsin)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_150598  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001030015 NP_001025186    
NM_033282 NP_150598 Q9UHM6 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC113558 AAI13559 Q9UHM6
BC143688 AAI43689 Q9UHM6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN4 NP_001025186 M.musculus Opn4 30044 Gene Info NP_001122071 81
R.norvegicus Opn4 192223   NP_620215 79
A.gambiae GPROP3 4577364   XP_001238570 43
A.gambiae GPROP1 4577354   XP_001238567 43
A.gambiae GPROP6 1282006   XP_322000 38
D.melanogaster Rh6 41889   NP_524368 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)