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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDHB13, Protocadherin beta 13
Sequence ID:NM_018933
RefSeqGene ID:NG_000017
Entrez Gene ID:56123
Ensembl ID:ENSG00000187372

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140593695 - 140596092

NM_018933 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13485140593508140596992

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5446016Full LengthBC033068protocadherin beta 13
6383780Full LengthBC071934protocadherin beta 13
6483735Full LengthBC051348protocadherin beta 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061756  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018933 NP_061756 Q9Y5F0 Cadherin
Cadherin_2
NM_019120 NP_061993 Q9UN66 Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
AF152492 AAD43753 Q9Y5F0
AF152501 AAD43762 Q9UN66
BC033068 AAH33068 Q9Y5F0
BC051348 AAH51348 Q9Y5F0
BC071934 AAH71934 Q9Y5F0
BC136801 AAI36802 B9EGV1
AF217745 AAK51613 Q9Y5F0
AY358427 AAQ88793 Q9Y5F0
AK021915 BAB13935 Q9HAB4
AK292821 BAF85510 A8K9V6
AK296151 BAG58890 B4DJM8

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)