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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EXOSC5, exosome component 5
Sequence ID:NM_020158
Entrez Gene ID:56915
Ensembl ID:ENSG00000077348

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 41892278 - 41903256

NM_020158 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
163684189227741892629
3694584189341841893507
4595994189566941895809
6007214189774541897866
7228354189877141898884
83610064190308541903255

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4308795Full LengthBC007742exosome component 5
6453881Full LengthBC107696exosome component 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064543  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020158 NP_064543 Q9NQT4 RNase_PH
RNase_PH_C

Related Sequences

 
mRNAGenPeptSwissProt
AF281134 AAF82135 Q9NQT4
BC007742 AAH07742 Q9NQT4
BC107696 AAI07697 Q9NQT4
AF285785 AAM75154 Q9NQT4
JF432476 ADZ15693  
AK314941 BAG37447 B2RC50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EXOSC5 NP_064543 R.norvegicus Exosc5 308441   NP_001100963 90
M.musculus Exosc5 27998 Gene Info NP_613052 89
A.thaliana AT3G46210 823766   NP_001030817 44
D.melanogaster Rrp46 41270   NP_650001 38
A.gambiae AgaP_AGAP002177 1269378   XP_308011 36
N.crassa NCU03268 3880570   XP_964421 33
C.elegans crn-5 174634   NP_496284 32
S.cerevisiae RRP46 852987   NP_011609 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)