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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. IDI1, isopentenyl-diphosphate delta isomerase 1
Sequence ID:NM_004508
Entrez Gene ID:3422
Ensembl ID:ENSG00000067064

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 1086028 - 1090099

NM_004508 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17149510859651087443
1496162610885711088701
1627171910892401089332
1720189210899381090110
1893215010948031095060

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30337530Full LengthBC057827isopentenyl-diphosphate delta isomerase 1
3682248IncompleteBC019227isopentenyl-diphosphate delta isomerase 1
3683381IncompleteBC006999isopentenyl-diphosphate delta isomerase 1
3997517IncompleteBC005247isopentenyl-diphosphate delta isomerase 1
4097088IncompleteBC025375isopentenyl-diphosphate delta isomerase 1
4243851IncompleteBC022418isopentenyl-diphosphate delta isomerase 1
6718063IncompleteBC107893isopentenyl-diphosphate delta isomerase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004499  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004508 NP_004499   NUDIX

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC005247 AAH05247 Q13907 EC 5.3.3.2
BC006999 AAH06999 Q13907 EC 5.3.3.2
BC019227 AAH19227 Q13907 EC 5.3.3.2
BC022418 AAH22418 Q13907 EC 5.3.3.2
BC025375 AAH25375 Q13907 EC 5.3.3.2
BC057827 AAH57827 Q13907 EC 5.3.3.2
BC107893 AAI07894 Q13907 EC 5.3.3.2
AF271720 AAK49435 Q13907 EC 5.3.3.2
BT006761 AAP35407 Q13907 EC 5.3.3.2
AK222875 BAD96595 Q13907 EC 5.3.3.2
AK303669 BAG64667 Q13907 EC 5.3.3.2
X17025 CAA34890 Q13907 EC 5.3.3.2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IDI1 NP_004499 R.norvegicus Idi1 89784   NP_445991 86
M.musculus Idi1 319554 Gene Info NP_663335 80
S.pombe idi1 2540174   NP_595164 55
A.thaliana IPP2 820960   NP_186927 55
N.crassa NCU07719 3878117   XP_961969 55
S.cerevisiae IDI1 855986   NP_015208 53
A.thaliana IPP1 831505   NP_197148 52
D.melanogaster CG5919 42526   NP_001163673 51
A.gambiae AgaP_AGAP001704 1281472   XP_321388 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)