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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDHB11, Protocadherin beta 11
Sequence ID:NM_018931
RefSeqGene ID:NG_000017
Entrez Gene ID:56125
Ensembl ID:ENSG00000197479

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 140579341 - 140581891

NM_018931 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13270140579347140582616

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322663Full LengthBC113611protocadherin beta 11
8327600Full LengthBC112132protocadherin beta 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_061754  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018931 NP_061754 Q9Y5F2 Cadherin
Cadherin_2

Related Sequences

 
mRNAGenPeptSwissProt
AF152490 AAD43751 Q9Y5F2
BC112132 AAI12133 Q9Y5F2
BC113611 AAI13612 Q9Y5F2
AF217747 AAK51615 Q9Y5F2
HQ258515 ADR83269  
D88795 BAA21565 O15200
AB209225 BAD92462 Q59G84
AK313428 BAG36220 B2R8M3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDHB11 NP_061754 R.norvegicus Pcdhb19 548106   XP_001056051 76
M.musculus Pcdhb19 93890 Gene Info NP_444374 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)