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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RBFOX2, RNA binding protein, fox-1 homolog (C. elegans) 2
Sequence ID:NM_001031695
NM_001082576
NM_001082578
NM_001082577
NM_001082579
NM_014309
RefSeqGene ID:NG_029628
Entrez Gene ID:23543
Ensembl ID:ENSG00000100320

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 36140251 - 36236265

 Exon Info From UCSC:
NM_001031695
NM_001082576
NM_001082578
NM_001082577
NM_001082579
NM_014309

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4346741Full LengthBC013115RNA binding motif protein 9
4555865Full LengthBC025281RNA binding motif protein 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055124  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001031695 NP_001026865    
NM_001082576 NP_001076045    
NM_001082577 NP_001076046    
NM_001082578 NP_001076047    
NM_001082579 NP_001076048    
NM_014309 NP_055124   RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC013115 AAH13115 O43251
BC025281 AAH25281 O43251
AY072786 AAL67150 O43251
AF229058 AAL71905 O43251
AY960684 AAX84843 O43251
DQ778625 ABG77459 O43251
DQ891720 ABM82646  
DQ894897 ABM85823  
DQ894898 ABM85824  
AK055213 BAB70875 O43251
AK291460 BAF84149 O43251
AB649123 BAK53481 F8WSN4
AL009266 CAA15842 O43251
CR456559 CAG30445 O43251
CU013159 CAK54590  
CU013447 CAK54889  
AM419009 CAL91352 O43251

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBFOX2 NP_001076048 R.norvegicus Rbm9 362950   NP_001073364 97
M.musculus Rbfox2 93686 Gene Info NP_001104297 97
A.gambiae AgaP_AGAP006089 4576708   XP_001237762 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)