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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RBM39, RNA binding motif protein 39
Sequence ID:NM_184234
NM_004902
NM_001242599
NM_001242600
RefSeqGene ID:NG_029955
Entrez Gene ID:9584
Ensembl ID:ENSG00000131051

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 34292249 - 34320728

 Exon Info From UCSC:
NM_184234
NM_004902

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40085367Full LengthBC131543RNA binding motif protein 39
40148190Full LengthBC158172RNA binding motif protein 39
40148871Full LengthBC141835RNA binding motif protein 39
6668060IncompleteBC107886RNA-binding region (RNP1, RRM) containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_909122  NP_004893  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001242599 NP_001229528    
NM_001242600 NP_001229529    
NM_004902 NP_004893   RRM_1
NM_184234 NP_909122 Q14498 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
L10910 AAA16346 Q14498
L10911 AAA16347 Q14498
BC131543 AAI31544 Q14498
BC141835 AAI41836 Q14498
BC158172 AAI58173 Q14498
AK126158 BAG54289 B3KWX7
AK299165 BAG61212 B4DRA0
AK299678 BAG61586 Q14498
AK303910 BAG64839 B4E1M7
AK297520 BAH12603 B7Z4L7
BX537770 CAD97833 Q7Z3L0
BX640714 CAE45833 Q6N037
BX640812 CAE45890 Q6MZY7
CR749443 CAH18281 Q68DD9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBM39 NP_909122 M.musculus Rbm39 170791 Gene Info NP_573505 100
R.norvegicus Rbm39 362251   NP_001013225 100
D.melanogaster CG11266 33989   NP_609095 60
A.gambiae AgaP_AGAP008433 1277542   XP_317010 58
C.elegans Y55F3AM.3 176922   NP_500025 51
A.thaliana AT5G09880 830848   NP_568220 46
A.thaliana AT2G16940 816197   NP_001189537 43
N.crassa NCU03491 3872025   XP_955878 42
S.pombe rsd1 2542545   NP_594422 39
P.falciparum MAL13P1.120 813670   XP_001349956 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)