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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS4Y1, ribosomal protein S4, Y-linked 1
Sequence ID:NM_001008
Entrez Gene ID:6192

Database Links

UniGeneEntrez GeneOMIMHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Yp11.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Y: 2709641 - 2734991

NM_001008 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14627096222709667
4712427102052710282
12530527121172712297
30640327136862713783
40457527226402722811
57673327331282733285
73489527348332734994

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3048929Full LengthBC010286ribosomal protein S4, Y-linked 1
40003602Full LengthBC100905ribosomal protein S4, Y-linked 1
40003603IncompleteBC100906ribosomal protein S4, Y-linked 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000999  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001008 NP_000999 P22090 KOW
Ribosomal_S4e
RS4NT

Related Sequences

 
mRNAGenPeptSwissProt
M58459 AAA63256 P22090
BC010286 AAH10286 P22090
BC100905 AAI00906 Q496E4
BC100906 AAI00907 A4FU11
DQ891597 ABM82523  
DQ894791 ABM85717  
AK222594 BAD96314 Q53HI6
AK292819 BAF85508 P22090

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS4Y1 NP_000999 M.musculus Rps4x 20102 Gene Info NP_033120 93
R.norvegicus LOC100362640 100362640   XP_002730304 93
R.norvegicus Rps4x 29426   NP_001007601 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)