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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPE, ribulose-5-phosphate-3-epimerase
Sequence ID:NM_006916
NM_199229
Entrez Gene ID:6120
Ensembl ID:ENSG00000197713

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q32-q33.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 210874419 - 210885542

 Exon Info From UCSC:
NM_006916
NM_199229

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505010Full LengthBC005148ribulose-5-phosphate-3-epimerase
4107315Full LengthBC016764ribulose-5-phosphate-3-epimerase
6047438Full LengthBC072401ribulose-5-phosphate-3-epimerase
4250666IncompleteBC063135ribulose-5-phosphate-3-epimerase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_954699  NP_008847  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_006916 NP_008847 Q53TV9   Ribul_P_3_epim
NM_152519 NP_689732 A0AUZ9    
NM_199229 NP_954699 Q96AT9 EC 5.1.3.1 Ribul_P_3_epim

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC005148 AAH05148 Q96AT9 EC 5.1.3.1
BC016764 AAH16764 Q96AT9 EC 5.1.3.1
BC032837 AAH32837 I6L9A8  
BC070141 AAH70141 A0AUZ9  
BC072401 AAH72401 Q96AT9 EC 5.1.3.1
BC126155 AAI26156 A0AUZ9  
BC143914 AAI43915 A0AUZ9  
AY947714 AAY51626 Q4G1Y9  
EU832009 ACE86672    
EU831915 ACE87356    
AK056028 BAB71076 Q96AT9
Q53TV9
EC 5.1.3.1
AK056911 BAB71308 A0AUZ9  
AK074441 BAB85085 A0AUZ9  
AK093658 BAC04212 Q96AT9 EC 5.1.3.1
AK291035 BAF83724 Q96AT9 EC 5.1.3.1
AK096199 BAG53229 B3KTW7  
AK303184 BAG64278 B4E016  
AJ224326 CAA11895 Q96AT9 EC 5.1.3.1
AL133053 CAB61379 A0AUZ9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPE NP_954699 R.norvegicus Rpe 501157   NP_001029075 98
M.musculus Rpe 66646 Gene Info NP_079959 97
D.melanogaster CG30499 35692   NP_610298 64
A.gambiae AgaP_AGAP005080 1274761   XP_313959 61
C.elegans F08F8.7 176043   NP_498620 61
S.cerevisiae RPE1 853322   NP_012414 57
A.thaliana AT1G63290 842635   NP_176518 57
A.thaliana AT3G01850 821068   NP_850495 55
N.crassa NCU00519 3879870   XP_963721 53
P.falciparum PFL0960w 811244   XP_001350598 50
S.pombe SPAC31G5.05c 2543174   NP_594005 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)