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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PUM1, Pumilio homolog 1 (Drosophila)
Sequence ID:NM_001020658
NM_014676
Entrez Gene ID:9698
Ensembl ID:ENSG00000134644

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 31404352 - 31538542

 Exon Info From UCSC:
NM_001020658
NM_014676

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3528160Full LengthBC013398pumilio homolog 1 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055491  NP_001018494  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001020658 NP_001018494   PUF
NM_014676 NP_055491 Q14671 PUF

Related Sequences

 
mRNAGenPeptSwissProt
AF315592 AAG31807 Q14671
BC013398 AAH13398 Q14671
JF432347 ADZ15564  
D43951 BAA07895 Q14671
AK222605 BAD96325 Q53HH5
AK291779 BAF84468 Q14671
AK096476 BAG53299 B3KU37
AK294477 BAG57703 B4DG92
AK300457 BAG62177 B4DU15

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PUM1 NP_001018494 M.musculus Pum1 80912 Gene Info NP_109647 99
R.norvegicus Pum1 362609   NP_001102154 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)