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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MSH3, mutS homolog 3 (E. coli)
Sequence ID:NM_002439
RefSeqGene ID:NG_016607
Entrez Gene ID:4437
Ensembl ID:ENSG00000113318

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q11-q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 79950470 - 80171740

 Exon Info From UCSC:
NM_002439

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146465Full LengthBC130434mutS homolog 3 (E. coli)
40146467Full LengthBC130436mutS homolog 3 (E. coli)
2959447IncompleteBC004177mutS homolog 3 (E. coli)
3532592IncompleteBC011817mutS homolog 3 (E. coli)
4811079IncompleteBC017273mutS homolog 3 (E. coli)
4906085IncompleteBC098436mutS homolog 3 (E. coli)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002430  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002439 NP_002430 P20585 MutS_V
MutS_I
MutS_II
MutS_III

Related Sequences

 
mRNAGenPeptSwissProt
U61981 AAB06045 P20585
J04810 AAB47281 P20585
BC011817 AAH11817 P20585
BC130434 AAI30435 A1L480
BC130436 AAI30437 P20585
AK289856 BAF82545 A8K1E1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MSH3 NP_002430 M.musculus Msh3 17686 Gene Info NP_034959 82
R.norvegicus Msh3 499505   XP_574830 82
A.thaliana MSH3 828659   NP_194284 43
N.crassa NCU08115 3880023   XP_963874 40
S.pombe msh3 2543392   NP_593952 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)