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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPB2, small nuclear ribonucleoprotein polypeptide B
Sequence ID:NM_003092
NM_198220
Entrez Gene ID:6629
Ensembl ID:ENSG00000125870

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 16712347 - 16721650

 Exon Info From UCSC:
NM_003092
NM_198220

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4286926Full LengthBC018022small nuclear ribonucleoprotein polypeptide B''
5533477Full LengthBC036737small nuclear ribonucleoprotein polypeptide B''
3503191IncompleteBC008311small nuclear ribonucleoprotein polypeptide B''

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003083  NP_937863  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003092 NP_003083 P08579 RRM_1
NM_198220 NP_937863 P08579 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M15841 AAA36796 P08579
BC008311 AAH08311 Q86YK2
BC018022 AAH18022 P08579
BC036737 AAH36737 P08579
DQ890864 ABM81790  
DQ894019 ABM84945  
AK313004 BAG35840 P08579
AB451234 BAG70048 B5BTZ8
AB451359 BAG70173 B5BTZ8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPB2 NP_003083 R.norvegicus Snrpb2 362223   NP_001102062 97
M.musculus Snrpb2 20639 Gene Info NP_067310 96
A.thaliana U2B'' 817576   NP_180585 56
A.thaliana AT1G06960 837206   NP_850936 55
C.elegans rnp-3 177182   NP_500505 49
S.pombe usp102 2540865   NP_596424 42
N.crassa NCU08034 3878811   XP_962704 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta