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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCDH15, protocadherin-related 15
Sequence ID:NM_001142763
NM_001142764
NM_001142765
NM_001142766
NM_001142767
NM_001142768
NM_001142769
NM_001142770
NM_001142771
NM_001142772
NM_001142773
NM_033056
RefSeqGene ID:NG_009191
Entrez Gene ID:65217
Ensembl ID:ENSG00000150275

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
DEAFNESS, AUTOSOMAL RECESSIVE23 
USHER SYNDROME, TYPE 1DCDH23
USHER SYNDROME, TYPE 1F 

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 55580938 - 57387702

 Exon Info From UCSC:
NM_001142763
NM_001142764
NM_001142765
NM_001142766
NM_001142767
NM_001142768
NM_001142769
NM_001142770
NM_001142771
NM_001142772
NM_001142773
NM_033056

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062978BC156450protocadherin 15

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_149045  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142763 NP_001136235    
NM_001142764 NP_001136236    
NM_001142765 NP_001136237    
NM_001142766 NP_001136238    
NM_001142767 NP_001136239    
NM_001142768 NP_001136240    
NM_001142769 NP_001136241    
NM_001142770 NP_001136242    
NM_001142771 NP_001136243    
NM_001142772 NP_001136244    
NM_001142773 NP_001136245    
NM_033056 NP_149045 Q96QU1 Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC156450 AAI56451  
AY029205 AAK31581 Q96QU1
AY029237 AAK31804 Q96QU1
AY388963 AAR26468 Q96QU1
EU718480 ACF76476 C6ZEF5
EU718481 ACF76477 C6ZEF6
EU718482 ACF76478 C6ZEF7
AK126923 BAG54399 B3KX87
AL834134 CAD38850 Q96QU1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCDH15 NP_001136241 M.musculus Pcdh15 11994 Gene Info NP_001136214 93
R.norvegicus Pcdh15 690865   XP_002728983 93
A.gambiae AgaP_AGAP002310 1273658   XP_312660 33
D.melanogaster Cad99C 43528   NP_001189311 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)