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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHRAC1, chromatin accessibility complex 1
Sequence ID:NM_017444
NR_023360
NR_040712
Entrez Gene ID:54108
Ensembl ID:ENSG00000104472

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 141521598 - 141525346

NM_017444 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1345141521400141521744
346472141524467141524593
4732500141525224141527251

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3908717Full LengthBC015891chromatin accessibility complex 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_059140  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017444 NP_059140 Q9NRG0 CBFD_NFYB_HMF

Related Sequences

 
mRNAGenPeptSwissProt
AF226076 AAF72416 Q9NRG0
BC015891 AAH15891 Q9NRG0
DQ895620 ABM86546  
EU176214 ABW03665  
AK023537 BAB14601 Q9NRG0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHRAC1 NP_059140 M.musculus Chrac1 93696 Gene Info NP_444298 83
R.norvegicus Chrac1 315058   NP_001128352 83
A.gambiae AgaP_AGAP007481 1269743   XP_308392 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)