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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCMT1, protein-L-isoaspartate (D-aspartate) O-methyltransferase
Sequence ID:NM_001252049
NM_001252050
NM_001252051
NM_001252052
NM_001252053
NM_005389
Entrez Gene ID:5110
Ensembl ID:ENSG00000120265

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q24-q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 150070847 - 150132549

Transcript StartTranscript EndChromosomal Start Chromosomal End
1262150070830150071091
263367150092297150092401
368399150094273150094304
400504150111089150111193
505625150114684150114804
626711150117550150117635
712928150123335150123551
9291733150131751150132555

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3010742Full LengthBC007501protein-L-isoaspartate (D-aspartate) O-methyltransferase
3346722Full LengthBC008748protein-L-isoaspartate (D-aspartate) O-methyltransferase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005380  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252049 NP_001238978    
NM_001252050 NP_001238979    
NM_001252051 NP_001238980    
NM_001252052 NP_001238981    
NM_001252053 NP_001238982    
NM_005389 NP_005380   PCMT

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M93009 AAA90933 P22061 EC 2.1.1.77
M93008 AAA90934 P22061 EC 2.1.1.77
BC007501 AAH07501 P22061 EC 2.1.1.77
BC008748 AAH08748 P22061 EC 2.1.1.77
HQ448137 ADQ32618    
D13892 BAA02991 P22061 EC 2.1.1.77
D25545 BAA05028 P22061 EC 2.1.1.77
D25546 BAA05029 P22061 EC 2.1.1.77
D25547 BAA05030 P22061 EC 2.1.1.77
AK289724 BAF82413 P22061 EC 2.1.1.77
AK304532 BAH14208 B7Z972  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCMT1 NP_005380 R.norvegicus Pcmt1 25604   NP_037205 96
M.musculus Pcmt1 18537 Gene Info NP_032812 94
C.elegans pcm-1 178981   NP_504551 53
A.thaliana PIMT2 835089   NP_001078740 52
N.crassa NCU05078 3872214   XP_956067 49
S.pombe pcm2 2543383   NP_595011 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)