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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX17, sorting nexin 17
Sequence ID:NM_001267059
NM_001267060
NM_001267061
NM_014748
NR_049782
NR_049783
NR_049784
NR_049785
NR_049786
NR_049787
NR_049788
Entrez Gene ID:9784
Ensembl ID:ENSG00000115234

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p23-p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 27593478 - 27599989


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3010648Full LengthBC014620sorting nexin 17
3140610Full LengthBC002524sorting nexin 17
3143104Full LengthBC002610sorting nexin 17
6044270Full LengthBC050590sorting nexin 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055563  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001267059 NP_001253988    
NM_001267060 NP_001253989    
NM_001267061 NP_001253990    
NM_014748 NP_055563 Q15036 PX

Related Sequences

 
mRNAGenPeptSwissProt
BC002524 AAH02524 Q15036
BC002610 AAH02610 Q15036
BC014620 AAH14620 Q15036
BC050590 AAH50590 Q15036
BT007167 AAP35831 Q15036
D31764 BAA06542 Q15036
AK222543 BAD96263 Q15036
AK293252 BAG56784 B4DDM3
AK293464 BAG56959 B4DE48
AK295278 BAG58262 B4DDM3
AK297054 BAG59579 B4DLL7
AK298620 BAG60799 B4DQ37
AK298856 BAG60979 B4DDM3
AK298869 BAG60989 B4DQM7
AK300144 BAG61930 B4DTB8
AK300641 BAG62330 B4DUG8
AK316373 BAH14744 B7ZAQ8
CR457081 CAG33362 Q15036

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX17 NP_055563 M.musculus Snx17 266781 Gene Info NP_710147 99
R.norvegicus Snx17 298836   NP_001011981 98
A.gambiae AgaP_AGAP011491 1278369   XP_317811 47
D.melanogaster CG5734 34354   NP_609353 44
C.elegans F17H10.3 184624   NP_001076762 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)