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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OXCT1, 3-oxoacid CoA transferase 1
Sequence ID:NM_000436
RefSeqGene ID:NG_011823
Entrez Gene ID:5019
Ensembl ID:ENSG00000083720

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
SUCCINYL COA:3-OXOACID COA TRANSFERASE DEFICIENCY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:5p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 41730843 - 41794337

 Exon Info From UCSC:
NM_000436

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4148643Full LengthBC0090013-oxoacid CoA transferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000427  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000436 NP_000427 P55809 EC 2.8.3.5 CoA_trans

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U62961 AAB07366 P55809 EC 2.8.3.5
BC009001 AAH09001 P55809 EC 2.8.3.5
EF095213 ABL01517 A1E286  
DQ891805 ABM82731    
DQ894989 ABM85915    
AK312327 BAG35249 B2R5V2  
AK298352 BAH12764 B7Z528  
AK299668 BAH13095 B7Z609  
AK315902 BAH14273 B7Z528  
CR457049 CAG33330 Q6IAV5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OXCT1 NP_000427 M.musculus Oxct1 67041 Gene Info NP_077150 92
R.norvegicus Oxct1 690163   NP_001121052 92
A.gambiae AgaP_AGAP006096 1276768   XP_316153 68
C.elegans C05C10.3 174548   NP_496144 65
D.melanogaster CG1140 38261   NP_647683 62
N.crassa NCU06881 3875425   XP_959228 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)