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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NBR1, neighbor of BRCA1 gene 1
Sequence ID:NM_005899
NM_031858
NM_031862
RefSeqGene ID:NG_005905
Entrez Gene ID:4077
Ensembl ID:ENSG00000188554

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 41322510 - 41329977

 Exon Info From UCSC:
NM_005899
NM_031858
NM_031862

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2989212Full LengthBC009808neighbor of BRCA1 gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114064  NP_005890  NP_114068  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005899 NP_005890 Q14596 PB1
UBA
NM_031858 NP_114064   PB1
UBA
NM_031862 NP_114068   PB1
UBA

Related Sequences

 
mRNAGenPeptSwissProt
AF227189 AAF74119 Q14596
BC009808 AAH09808 Q14596
AY450308 AAS15047 Q14596
D30756 BAA06417 Q14596
AK290005 BAF82694 A8K1U0
AK297425 BAH12580 B7Z4J4
AK299328 BAH13002 B7Z5R6
X76952 CAA54274 Q14596

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NBR1 NP_005890 M.musculus Nbr1 17966 Gene Info NP_032702 86
R.norvegicus Nbr1 303554   NP_001019936 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)