Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATRN, attractin
Sequence ID:NM_001207047
NM_139321
NM_139322
NM_012070
RefSeqGene ID:NG_029406
Entrez Gene ID:8455
Ensembl ID:ENSG00000088812

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 3564709 - 3631760

 Exon Info From UCSC:
NM_139321
NM_139322

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8069211Full LengthBC101705attractin
3896436IncompleteBC009724attractin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_647538  NP_647537  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001207047 NP_001193976    
NM_139321 NP_647537 O75882 EGF
Laminin_EGF
CUB
Kelch_1
PSI
EGF_2
NM_139322 NP_647538   EGF
Laminin_EGF
CUB
Kelch_1
PSI
EGF_2

Related Sequences

 
mRNAGenPeptSwissProt
AF106861 AAD03057 O75882
BC009724 AAH09724 Q96D99
BC101705 AAI01706 O75882
AB011120 BAA25474 O75882
AK293010 BAF85699 O75882
AK302730 BAG63948 B4DZ36

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATRN NP_647537 M.musculus Atrn 11990 Gene Info NP_033860 94
R.norvegicus Atrn 83526   NP_112641 93
A.gambiae AgaP_AGAP003506 1270925   XP_309653 44
D.melanogaster dsd 43315   NP_651571 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)