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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEMA5A, sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
Sequence ID:NM_003966
RefSeqGene ID:NG_016410
Entrez Gene ID:9037
Ensembl ID:ENSG00000112902

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5p15.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 9265652 - 9265979

 Exon Info From UCSC:
NM_003966

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40038868Full LengthBC115696sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003957  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003966 NP_003957 Q13591 TSP_1
Sema
PSI

Related Sequences

 
mRNAGenPeptSwissProt
U52840 AAC09473 Q13591
BC115696 AAI15697 Q13591
AK293441 BAG56944 B4DE33

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEMA5A NP_003957 M.musculus Sema5a 20356 Gene Info NP_033180 94
R.norvegicus Sema5a 310207   NP_001101129 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)