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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KATNB1, katanin p80 (WD repeat containing) subunit B 1
Sequence ID:NM_005886
Entrez Gene ID:10300
Ensembl ID:ENSG00000140854

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 57769781 - 57790797

 Exon Info From UCSC:
NM_005886

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964632Full LengthBC001353katanin p80 (WD repeat containing) subunit B 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005877  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005886 NP_005877 Q9BVA0 WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF052432 AAC09328 Q9BVA0
BC001353 AAH01353 Q9BVA0
BT007022 AAP35668 Q9BVA0
DQ890767 ABM81693  
AB209250 BAD92487 Q59G59
CR456762 CAG33043 Q9BVA0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KATNB1 NP_005877 M.musculus Katnb1 74187 Gene Info NP_083081 96
R.norvegicus Katnb1 291852   NP_001019917 95
A.gambiae AgaP_AGAP000319 1271944   XP_310805 38
D.melanogaster kat80 32581   NP_523363 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)