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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C20orf27, chromosome 20 open reading frame 27
Sequence ID:NM_017874
NM_001039140
NM_001258429
NM_001258430
NR_047675
Entrez Gene ID:54976
Ensembl ID:ENSG00000101220

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 3734159 - 3748391

Transcript StartTranscript EndChromosomal Start Chromosomal End
164837341573734804
64977137350433735165
77291037361153736253
911105337391823739324
1054123337406533740832
1234137637483093748451

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822218Full LengthBC012196chromosome 20 open reading frame 27
3510659Full LengthBC024036chromosome 20 open reading frame 27
3878803IncompleteBC010873chromosome 20 open reading frame 27

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039140 NP_001034229    
NM_001258429 NP_001245358 Q9GZN8  
NM_001258430 NP_001245359    

Related Sequences

 
mRNAGenPeptSwissProt
BC012196 AAH12196 Q9GZN8
BC024036 AAH24036 Q9GZN8
JF432746 ADZ15963  
AK000557 BAA91252 Q9GZN8
AK024220 BAB14854 Q9GZN8
AK290955 BAF83644 Q9GZN8
AK097645 BAG53501 Q9GZN8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C20orf27 NP_001034229 R.norvegicus RGD1311739 311428   NP_001020862 92
M.musculus 1700037H04Rik 67326 Gene Info NP_080367 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)