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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VSX1, visual system homeobox 1
Sequence ID:NM_001256271
NM_001256272
NM_014588
NM_199425
NR_045948
NR_045951
RefSeqGene ID:NG_008101
Entrez Gene ID:30813
Ensembl ID:ENSG00000100987

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CORNEAL DYSTROPHY, HEREDITARY POLYMORPHOUSPOSTERIORCOL8A2
CRANIOFACIAL ANOMALIES AND ANTERIOR SEGMENT DYSGENESIS SYNDROME 
KERATOCONUS 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 25056835 - 25063015

 Exon Info From UCSC:
NM_014588
NM_199425

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991944Full LengthBC126228visual system homeobox 1
9020486Full LengthBC136497visual system homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_955457  NP_055403  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256271 NP_001243200    
NM_001256272 NP_001243201    
NM_014588 NP_055403 Q9NZR4 Homeobox
NM_199425 NP_955457   Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF176797 AAF37425 Q9NZR4
AF251033 AAF99656 Q9NZR4
AF251034 AAF99657 Q9NZR4
BC126228 AAI26229 Q9NZR4
BC136497 AAI36498 Q9NZR4
DQ854807 ABI23973 Q9NZR4
DQ854808 ABI23974 Q9NZR4
DQ854809 ABI23975 Q9NZR4
DQ854810 ABI23976 Q9NZR4
DQ854811 ABI23977 Q9NZR4
DQ854812 ABI23978 Q9NZR4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VSX1 NP_055403 M.musculus Vsx1 114889 Gene Info NP_473409 77
R.norvegicus Vsx1 689704   NP_001103016 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)