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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SHANK1, SH3 and multiple ankyrin repeat domains 1
Sequence ID:NM_016148
Entrez Gene ID:50944
Ensembl ID:ENSG00000161681

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 51165083 - 51220195

 Exon Info From UCSC:
NM_016148

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057232  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016148 NP_057232 Q9Y566 Ank
SAM_1
PDZ
SH3_2

Related Sequences

 
mRNAGenPeptSwissProt
AF163302 AAD45121 Q9Y566
AF226728 AAF35887 Q9Y566

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SHANK1 NP_057232 R.norvegicus Shank1 78957   NP_113939 94
M.musculus Shank1 243961 Gene Info NP_001029287 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)