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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. AGRN, Agrin
Sequence ID:NM_198576
RefSeqGene ID:NG_016346
Entrez Gene ID:375790
Ensembl ID:ENSG00000188157

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
MYASTHENIA, LIMB-GIRDLE, FAMILIALDOK7
DOK7

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 955502 - 991492

 Exon Info From UCSC:
NM_198576

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3506210IncompleteBC004220agrin
3544662IncompleteBC007649agrin
3850833IncompleteBC034009agrin
4179742IncompleteBC063620agrin
5727776IncompleteBC084578agrin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_940978  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198576 NP_940978 O00468 EGF
Kazal_1
Laminin_EGF
Laminin_G_1
SEA
Laminin_G_2
NtA

Related Sequences

 
mRNAGenPeptSwissProt
S44195 AAB23327 Q15952
U84406 AAB52917 O00468
AF016903 AAC39776 O00468
BC004220 AAH04220 O00468
BC007649 AAH07649 O00468
BC034009 AAH34009 O00468
BC063620 AAH63620 O00468
BC084578 AAH84578 Q5XG79
AB191264 BAD52440 O00468
AK021586 BAG51039 B3KMM7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AGRN NP_940978 R.norvegicus Agrn 25592   NP_786930 83
M.musculus Agrn 11603 Gene Info NP_067617 82
C.elegans agr-1 3565243   NP_001022152 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta