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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SEC23A, Sec23 homolog A (S. cerevisiae)
Sequence ID:NM_006364
RefSeqGene ID:NG_012157
Entrez Gene ID:10484
Ensembl ID:ENSG00000100934

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CRANIOLENTICULOSUTURAL DYSPLASIA 

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 39501950 - 39572279

 Exon Info From UCSC:
NM_006364

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4821858Full LengthBC036649Sec23 homolog A (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006355  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006364 NP_006355 Q15436 Gelsolin
zf-Sec23_Sec24
Sec23_trunk
Sec23_helical
Sec23_BS

Related Sequences

 
mRNAGenPeptSwissProt
BC036649 AAH36649 Q15436
DQ890902 ABM81828  
DQ893347 ABM84273  
DQ894055 ABM84981  
AK312259 BAG35191 Q15436
AK127355 BAG54494 B3KXI2
AK293944 BAG57321 B4DF60
AK299862 BAG61717 B4DSQ5
AK303485 BAG64521 B4E0Q9
X97064 CAA65774 Q15436

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC23A NP_006355 M.musculus Sec23a 20334 Gene Info NP_033173 99
R.norvegicus Sec23a 58817   NP_001099202 99
D.melanogaster sec23 40694   NP_730978 76
A.gambiae AgaP_AGAP001759 1281416   XP_321324 75
C.elegans sec-23 180317   NP_507877 61
N.crassa NCU01318 3877564   XP_961404 59
S.pombe sec231 2538699   NP_587900 57
S.cerevisiae SEC23 856311   NP_015507 51
A.thaliana AT3G23660 821946   NP_001189956 50
A.thaliana AT1G05520 837054   NP_563741 49
P.falciparum Pfsec23 2655487   XP_001349299 49
A.thaliana AT4G14160 827055   NP_193152 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)