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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GABRB1, gamma-aminobutyric acid (GABA) A receptor, beta 1
Sequence ID:NM_000812
Entrez Gene ID:2560
Ensembl ID:ENSG00000163288

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 47424760 - 47428206

NM_000812 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14544703329447033747
4555464703393047034021
5476144703443347034500
6158354716326547163485
8369184732214347322225
91910564740533447405471
105712094740557547405727
121014544740869847408942
145522094742769047428444

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4797401Full LengthBC022449gamma-aminobutyric acid (GABA) A receptor, beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000803  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000812 NP_000803 P18505 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
S70733 AAB30712 P18505
BC022449 AAH22449 P18505
DQ892357 ABM83283  
DQ893370 ABM84296  
DQ895564 ABM86490  
DQ896690 ABM87689  
DQ896691 ABM87690  
AK312720 BAG35594 P18505
AK293691 BAG57128 B4DEL7
AK296023 BAG58792 B4DJD0
X14767 CAA32875 P18505

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GABRB1 NP_000803 M.musculus Gabrb1 14400 Gene Info NP_032095 98
R.norvegicus Gabrb1 25450   NP_037088 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)