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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHRNA9, Cholinergic receptor, nicotinic, alpha 9 (neuronal)
Sequence ID:NM_017581
Entrez Gene ID:55584
Ensembl ID:ENSG00000174343

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4p14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 40337502 - 40356525

NM_017581 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1804033746840337547
812264033784340337988
2273814033922640339380
3829144035089840351430
91518924035599540356972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322601Full LengthBC113549cholinergic receptor, nicotinic, alpha 9
8322627Full LengthBC113575cholinergic receptor, nicotinic, alpha 9
40080560Full LengthBC111595cholinergic receptor, nicotinic, alpha 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060051  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017581 NP_060051 Q9UGM1 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
AF227732 AAF61920 Q9UGM1
BC111595 AAI11596  
BC113549 AAI13550 Q9UGM1
BC113575 AAI13576 Q9UGM1
HQ258272 ADR83026  
AJ243342 CAB65091 Q9UGM1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHRNA9 NP_060051 R.norvegicus Chrna9 65024   NP_075219 91
M.musculus Chrna9 231252 Gene Info NP_001074573 91
C.elegans acr-21 185004   NP_498452 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)