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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. PTPRF, Protein tyrosine phosphatase, receptor type, F
Sequence ID:NM_002840
Entrez Gene ID:5792
Ensembl ID:ENSG00000142949

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 43996544 - 44089334

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5502598Full LengthBC048768protein tyrosine phosphatase, receptor type, F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002831  

Protein Infomation

NM_002840 NP_002831 P10586 EC fn3
NM_130440 NP_569707      

Related Sequences

BC048768 AAH48768 P10586 EC
DQ234351 ABB29980 Q308M3  
AB177856 BAD66834 Q5W9G3  
AB177857 BAD66835 P10586 EC
AB209478 BAD92715 Q59FI2  
AK125325 BAG54183 B3KWM1  
AK127007 BAG54420 B3KXA8  
AK127475 BAG54509 B3KXJ7  
AK301551 BAG63047 B4DWI5  
AB621807 BAK64143 G1UI20  
Y00815 CAA68754 P10586 EC
BX537361 CAD97607 Q7Z3X4  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens PTPRF NP_002831 R.norvegicus Ptprf 360406   NP_062122 96
M.musculus Ptprf 19268 Gene Info NP_035343 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)