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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP5C1, ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Sequence ID:NM_001001973
NM_005174
Entrez Gene ID:509
Ensembl ID:ENSG00000165629

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10p15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 7830139 - 7844838

 Exon Info From UCSC:
NM_001001973
NM_005174

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961142Full LengthBC000470ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
2961142Full LengthBC013394ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
3445817Full LengthBC000931ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
4092259Full LengthBC016812ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
4733791Full LengthBC020824ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
4908447IncompleteBC026049ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005165  NP_001001973  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001973 NP_001001973 P36542 ATP-synt
NM_005174 NP_005165   ATP-synt

Related Sequences

 
mRNAGenPeptSwissProt
BC000470 AAH00470 P36542
BC000931 AAH00931 P36542
BC013394 AAH13394 P36542
BC016812 AAH16812 P36542
BC020824 AAH20824 P36542
BC026049 AAH26049 Q8TAS0
HQ448142 ADQ32623  
D16562 BAA03996 P36542
D16563 BAA03997 P36542
AK292896 BAF85585 P36542
AK294061 BAG57407 B4DFE6
AK296803 BAG59376 B4DL14
CR457403 CAG33684 P36542

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP5C1 NP_001001973 M.musculus Atp5c1 11949 Gene Info NP_065640 91
R.norvegicus Atp5c1 116550   NP_446277 90
D.melanogaster ATPsyn-gamma 43507   NP_524550 60
C.elegans Y69A2AR.18 177038   NP_500214 59
A.gambiae AgaP_AGAP007966 1277984   XP_317504 57
N.crassa NCU09119 3875039   XP_958891 44
S.cerevisiae ATP3 852327   NP_009595 41
P.falciparum PF13_0061 814039   XP_001349841 40
A.thaliana ATP3 817866   NP_180863 39
S.pombe atp3 2539839   NP_595430 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)