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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL4A3BP, collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Sequence ID:NM_001130105
NM_005713
NM_031361
RefSeqGene ID:NG_029492
Entrez Gene ID:10087
Ensembl ID:ENSG00000113163

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 74675064 - 74807440

 Exon Info From UCSC:
NM_001130105
NM_005713
NM_031361

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3505746Full LengthBC000102collagen, type IV, alpha 3 (Goodpasture antigen) binding protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_112729  NP_005704  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130105 NP_001123577    
NM_005713 NP_005704 Q9Y5P4 PH
START
NM_031361 NP_112729   PH
START

Related Sequences

 
mRNAGenPeptSwissProt
AF136450 AAD30288 Q9Y5P4
AF232930 AAG42046 Q9Y5P4
BC000102 AAH00102 Q9Y5P4
AY453385 AAR26717 Q9Y5P4
AY453386 AAR26718 Q9Y5P4
AK091851 BAC03762 Q9Y5P4
AK292087 BAF84776 Q9Y5P4
AK096854 BAG53379 Q9Y5P4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL4A3BP NP_001123577 M.musculus Col4a3bp 68018 Gene Info NP_075909 97
R.norvegicus Col4a3bp 365652   NP_001102405 96
A.gambiae AgaP_AGAP007093 1270010   XP_565108 49
D.melanogaster cert 38928   NP_648199 48
C.elegans F25H2.6 172940   NP_492762 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)