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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EFNB3, ephrin-B3
Sequence ID:NM_001406
Entrez Gene ID:1949
Ensembl ID:ENSG00000108947

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7608546 - 7614656

NM_001406 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
151976085197609037
52081276112757611567
81390576117527611844
906101076119527612056
1011321776124847614690

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5286243Full LengthBC042944ephrin-B3
4814898IncompleteBC022499ephrin-B3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001397  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001406 NP_001397 Q15768 Ephrin

Related Sequences

 
mRNAGenPeptSwissProt
U57001 AAB05170 Q15768
U62775 AAC50707 Q15768
U66406 AAC51203 Q15768
BC022499 AAH22499 Q15768
BC042944 AAH42944 Q15768
AK314841 BAG37359 Q15768

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EFNB3 NP_001397 R.norvegicus Efnb3 360546   NP_001094450 97
M.musculus Efnb3 13643 Gene Info NP_031937 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)