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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTPRA, protein tyrosine phosphatase, receptor type, A
Sequence ID:NM_002836
NM_080840
NM_080841
Entrez Gene ID:5786
Ensembl ID:ENSG00000132670

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 2821415 - 2847378

 Exon Info From UCSC:
NM_002836
NM_080840
NM_080841

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3920094Full LengthBC027308protein tyrosine phosphatase, receptor type, A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_072097  NP_536338  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_002836 NP_002827      
NM_022575 NP_072097 Q9H269   Vps16_C
Vps16_N
NM_080413 NP_536338     Vps16_C
Vps16_N
NM_080840 NP_543030      
NM_080841 NP_543031      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M34668 AAA36528 P18433 EC 3.1.3.48
AF308801 AAG34678 Q9H269  
BC012422 AAH12422 Q9H269  
BC021291 AAH21291 Q9H269  
BC027308 AAH27308 P18433 EC 3.1.3.48
BC064406 AAH64406 Q9H269  
BC073959 AAH73959 Q6GMQ7  
BC126431 AAI26432 A1A4H0  
DQ891155 ABM82081    
DQ894334 ABM85260    
AK055787 BAB71013 Q9H269  
AB209702 BAD92939 Q59EV9  
AK290233 BAF82922 P18433 EC 3.1.3.48
AK294499 BAH11790 B7Z2A4  
AK294990 BAH11942 B7Z2Q6  
AK297293 BAH12540 B7Z4F4  
AK297647 BAH12641 B7Z4Q5  
X53364 CAA37447 P18433 EC 3.1.3.48
X54130 CAA38065 P18433 EC 3.1.3.48
X54890 CAA38662 P18433 EC 3.1.3.48
AL834401 CAD39063 Q9H269  
BX571753 CAE11878 P18433 EC 3.1.3.48

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTPRA NP_002827 M.musculus Ptpra 19262 Gene Info NP_001157160 96
R.norvegicus Ptpra 25167   NP_036895 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta