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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MATR3, matrin 3
Sequence ID:NM_001194954
NM_001194955
NM_001194956
NM_018834
NM_199189
NR_036535
RefSeqGene ID:NG_012846
Entrez Gene ID:9782
Ensembl ID:ENSG00000015479

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, adrenal medulla, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 138629685 - 138666133

 Exon Info From UCSC:
NM_001194954
NM_001194955
NM_001194956
NM_018834
NM_199189

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3921668Full LengthBC015031matrin 3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001194954 NP_001181883    
NM_001194955 NP_001181884    
NM_001194956 NP_001181885    
NM_018834 NP_061322 P43243  
NM_199189 NP_954659 P43243  

Related Sequences

 
mRNAGenPeptSwissProt
AF117236 AAF17217 P43243
AY007157 AAG02007 Q9H4N1
BC015031 AAH15031 P43243
DQ894337 ABM85263  
EU176255 ABW03706  
AB018266 BAA34443 P43243
AK001388 BAG50899 B3KM87
AK293952 BAG57327 B4DF66
AK299399 BAG61383 B4DRS1
AK316420 BAH14791 P43243
CR749210 CAH18067 Q68E03
CR749625 CAH18419 Q68D11
CR936615 CAI56758 Q5CZA7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MATR3 NP_954659 R.norvegicus Matr3 29150   NP_062022 98
M.musculus Matr3 17184 Gene Info NP_034901 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta