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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LRRC47, Leucine rich repeat containing 47
Sequence ID:NM_020710
Entrez Gene ID:57470
Ensembl ID:ENSG00000130764

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 3696783 - 3712500

NM_020710 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
47116336967833697899
1164125336980753698164
1254135636992243699326
1357147237005593700674
1473158937016503701766
1590205137034123703873
2052269437124253713067

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4330114Full LengthBC031301leucine rich repeat containing 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065761  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020710 NP_065761 Q8N1G4 LRR_1
B3_4

Related Sequences

 
mRNAGenPeptSwissProt
BC031301 AAH31301 Q8N1G4
AB033011 BAA86499 Q8N1G4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LRRC47 NP_065761 M.musculus Lrrc47 72946 Gene Info NP_957678 88
R.norvegicus Lrrc47 362672   NP_001129138 88
A.gambiae AgaP_AGAP011472 1278366   XP_317834 37
C.elegans Y54E10A.6 171890   NP_491115 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)