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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ITGA3, integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
Sequence ID:NM_002204
NM_005501
RefSeqGene ID:NG_029107
Entrez Gene ID:3675
Ensembl ID:ENSG00000005884

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 48140901 - 48143396

 Exon Info From UCSC:
NM_002204
NM_005501

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020626Full LengthBC136636integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
9052848Full LengthBC144328integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)
40148521Full LengthBC150190integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005492  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002204 NP_002195 P26006  
NM_005501 NP_005492   FG-GAP
Integrin_alpha2

Related Sequences

 
mRNAGenPeptSwissProt
M59911 AAA36120 P26006
BC043917 AAH43917 Q86SW1
BC136636 AAI36637 P26006
BC144328 AAI44329 P26006
BC150190 AAI50191 P26006
D01038 BAA00845 P26006
AB209658 BAD92895 Q59F03
AK289961 BAF82650 P26006
AK293323 BAG56841 B4DDT0
AK303384 BAG64440 B4E0H8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ITGA3 NP_005492 M.musculus Itga3 16400 Gene Info NP_038593 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)