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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATG12, Autophagy related 12
Sequence ID:NM_004707
Entrez Gene ID:9140
Ensembl ID:ENSG00000145782

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q21-q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 115167044 - 115173384

NM_004707 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
33668115163894115167559
36693731115168298115168360
37323868115173324115173460
38694330115177086115177547

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3864058Full LengthBC012266ATG12 autophagy related 12 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004698  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004707 NP_004698 O94817 APG12

Related Sequences

 
mRNAGenPeptSwissProt
BC011033 AAH11033 O94817
BC012266 AAH12266 O94817
EU554057 ACD74941 C1IDX9
AB017507 BAA36493 O94817
AK313320 BAG36125 B2R8C8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATG12 NP_004698 M.musculus Atg12 67526 Gene Info NP_080493 89
R.norvegicus Atg12 361321   NP_001033584 86
A.gambiae AgaP_AGAP012847 1268773   XP_307342 60
A.gambiae AgaP_AGAP007296 1269871   XP_308525 60
D.melanogaster Atg12 39383   NP_648551 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)