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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRPC4, Transient receptor potential cation channel, subfamily C, member 4
Sequence ID:NM_003306
NM_016179
NM_001135955
NM_001135957
NM_001135956
NM_001135958
RefSeqGene ID:NG_029849
Entrez Gene ID:7223
Ensembl ID:ENSG00000133107

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 38211001 - 38443939

 Exon Info From UCSC:
NM_003306
NM_016179
NM_001135955
NM_001135957
NM_001135956
NM_001135958

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008477Full LengthBC105917transient receptor potential cation channel, subfamily C, member 4
40008478Full LengthBC104725transient receptor potential cation channel, subfamily C, member 4
40008481Full LengthBC105641transient receptor potential cation channel, subfamily C, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057263  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135955 NP_001129427    
NM_001135956 NP_001129428    
NM_001135957 NP_001129429    
NM_001135958 NP_001129430    
NM_003306 NP_003297    
NM_016179 NP_057263 Q9UBN4 Ank
Ion_trans
TRP_2

Related Sequences

 
mRNAGenPeptSwissProt
U40983 AAC50630 Q9UBN4
AF175406 AAD51736 Q9UBN4
AF063822 AAF22927 Q9UBN4
AF063823 AAF22928 Q9UBN4
AF063824 AAF22929 Q9UBN4
AF063825 AAF22930 Q9UBN4
BC104725 AAI04726 Q9UBN4
BC105306 AAI05307 Q3MHB9
BC105641 AAI05642 Q2M2U7
BC105917 AAI05918 Q3KR50
AF421358 AAL24549 Q9UBN4
AF421359 AAL24550 Q9UBN4
AF421360 AAL24551 Q9UBN4
AF421361 AAL24552 Q96P04
AF421362 AAL24553 Q9UBN4
AK312524 BAG35423 B2R6C6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRPC4 NP_003297 R.norvegicus Trpc4 84494   NP_536321 97
M.musculus Trpc4 22066 Gene Info NP_058680 97
D.melanogaster trpgamma 34991   NP_001137830 56
A.gambiae AgaP_AGAP008435 1277541   XP_317008 56
C.elegans trp-2 192056   NP_001022703 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta