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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BDP1, B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
Sequence ID:NM_018429
Entrez Gene ID:55814
Ensembl ID:ENSG00000145734

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 70751694 - 70863646

 Exon Info From UCSC:
NM_018429

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007260Full LengthBC146792B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
5015560IncompleteBC032146B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
8860129IncompleteBC161615B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060899  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018429 NP_060899 A6H8Y1 Myb_DNA-binding

Related Sequences

 
mRNAGenPeptSwissProt
AF176695 AAG09268 A6H8Y1
AF298151 AAG30220 A6H8Y1
AF298152 AAG30221 A6H8Y1
BC032146 AAH32146 A6H8Y1
BC146792 AAI46793 A6H8Y1
BC161615 AAI61615 B1WB49
AB033067 BAA86555 A6H8Y1
AB051476 BAB21780 A6H8Y1
AK057871 BAB71602 A6H8Y1
AJ238520 CAC04245 A6H8Y1
BX641011 CAE46010 A6H8Y1
CR749229 CAH18085 A6H8Y1
CR749289 CAH18144 A6H8Y1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BDP1 NP_060899 M.musculus Bdp1 544971 Gene Info NP_001074530 54
R.norvegicus Bdp1 294687   NP_001099873 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)