Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHD3, chromodomain helicase DNA binding protein 3
Sequence ID:NM_001005271
NM_001005273
NM_005852
Entrez Gene ID:1107
Ensembl ID:ENSG00000170004

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7788213 - 7793037

 Exon Info From UCSC:
NM_001005271
NM_001005273
NM_005852

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4536556IncompleteBC110648chromodomain helicase DNA binding protein 3
100062993BC156472chromodomain helicase DNA binding protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005843  NP_001005273  NP_001005271  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001005271 NP_001005271     SNF2_N
Helicase_C
Chromo
PHD
DUF1086
DUF1087
CHDNT
CHDCT2
NM_001005273 NP_001005273 Q12873 EC 3.6.4.12 SNF2_N
Helicase_C
Chromo
PHD
DUF1086
DUF1087
CHDNT
CHDCT2
NM_005852 NP_005843     SNF2_N
Helicase_C
Chromo
PHD
DUF1086
DUF1087
CHDNT
CHDCT2

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U91543 AAC39923 Q12873 EC 3.6.4.12
U08379 AAC50228 Q12873 EC 3.6.4.12
BC110648 AAI10649 Q2TAZ1  
BC156472 AAI56473    
AK125928 BAG54266 B3KWV4  
AK296725 BAG59313 B4DKV1  
AK296937 BAG59488 B4DLC6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHD3 NP_001005271 M.musculus Chd3 216848 Gene Info NP_666131 98
R.norvegicus Chd3 303241   XP_220602 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)