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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC29A1, solute carrier family 29 (nucleoside transporters), member 1
Sequence ID:NM_001078174
NM_001078177
NM_004955
NM_001078175
NM_001078176
Entrez Gene ID:2030
Ensembl ID:ENSG00000112759

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 44187392 - 44197400

 Exon Info From UCSC:
NM_001078174
NM_001078177
NM_004955
NM_001078175
NM_001078176

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3010092Full LengthBC008954solute carrier family 29 (nucleoside transporters), member 1
3051441Full LengthBC001382solute carrier family 29 (nucleoside transporters), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004946  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001078174 NP_001071642    
NM_001078175 NP_001071643    
NM_001078176 NP_001071644    
NM_001078177 NP_001071645    
NM_004955 NP_004946 Q99808 Nucleoside_tran

Related Sequences

 
mRNAGenPeptSwissProt
U81375 AAC51103 Q99808
AF079117 AAC62495 Q99808
BC001382 AAH01382 Q99808
BC008954 AAH08954 Q99808
DQ892133 ABM83059  
DQ895327 ABM86253  
AK090491 BAG52169 B3KQV7
AK090615 BAG52197 Q99808
AK293558 BAH11534 B7Z1J8
AK304285 BAH14150 B7Z914
AB490708 BAI39492 C8KHU1
AB490709 BAI39493 C8KHU2
AX775997 CAE11698  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC29A1 NP_004946 M.musculus Slc29a1 63959 Gene Info NP_075018 80
R.norvegicus Slc29a1 63997   NP_113872 78
A.gambiae AgaP_AGAP009114 1280065   XP_319864 39
D.melanogaster Ent1 33207   NP_722628 35
N.crassa NCU00356 3873877   XP_957827 30
S.cerevisiae FUN26 851211   NP_009380 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)