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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX39B, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Sequence ID:NM_004640
NM_080598
Entrez Gene ID:7919
Ensembl ID:ENSG00000198563

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31498002 - 31509747

 Exon Info From UCSC:
NM_004640
NM_080598

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2964517Full LengthBC000361HLA-B associated transcript 1
3010263Full LengthBC013006HLA-B associated transcript 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004631  NP_542165  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004640 NP_004631 Q13838 EC 3.6.4.13 DEAD
Helicase_C
NM_080598 NP_542165 Q13838 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC000361 AAH00361 Q13838 EC 3.6.4.13
BC013006 AAH13006 Q13838 EC 3.6.4.13
BT009909 AAP88911 Q13838 EC 3.6.4.13
DQ891881 ABM82807    
DQ895067 ABM85993    
AB209217 BAD92454 Q59G92  
AK222912 BAD96632 Q13838 EC 3.6.4.13
AK294939 BAG58016 B4DH55  
AK295634 BAG58508 B4DIJ6  
AK295854 BAG58660 B4DIZ8  
AK298194 BAG60464 B4DP52  
AK316469 BAH14840 B4DIZ8  
Z37166 CAA85523 Q13838 EC 3.6.4.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX39B NP_004631 M.musculus Ddx39b 53817 Gene Info NP_062667 100
R.norvegicus Ddx39b 114612   NP_579834 100
D.melanogaster Hel25E 33781   NP_723089 86
A.gambiae AgaP_AGAP009075 1280031   XP_319825 85
S.pombe uap56 2542433   NP_594261 71
N.crassa NCU09076 3881069   XP_964893 67
S.cerevisiae SUB2 851475   NP_010199 66
P.falciparum UAP56 812689   XP_001349607 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)